rs36494323 SNP Detail

Summary

• ID
  rs36494323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95721083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTCCCC CTTGGCGCTG
  GAGGCCCGGG CTTCTCAGCT CAGCTTCCCG CCTGCCCCCT TTGTTTGAAG CCCTAGTAAG
  GGGATGGTGA CTGGGGGGGG GGGTAAGGGG GACCCAGGCT TTCATTCGAC CTTCAGCCCC
  CTGTACTAAG AGGAAAGTGT CCCTTACTCC AGTAGTCTGC TGCCTGCAAA CAGGGAGGCT
  Y
  CGTCCAGTCA CTTTTGCCTG GAGGAGAAAA CCAGGTAGAT TCTTGCTCCT ACTCCTTTTT
  GGCTTCTTTT TCCTCCCATC TCTCCCTTCC CACCATCTCC TTTCCTTCTC CACAGCCTCC
  TTTCTTCCCT CTCTTTCTTG TTATCCTGAA TCCTCCCTCC CCCCTCCTCT GACACTGACA
  TGTAGTTAAT GGTGGGTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51973974	NES14993162	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss322809824	CHEV_8_97518355	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36494323					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51973974	NES14993162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95721083 () rs orientation: forward

Symbol	Name	Function Class
Adgrg1	adhesion G protein-coupled receptor G1	within coordinates
Tssr78941	transcription start site region 78941	1753 bp downstream
Tssr78942	transcription start site region 78942	1581 bp downstream
Tssr78943	transcription start site region 78943	1518 bp downstream
Tssr78944	transcription start site region 78944	128 bp downstream
Tssr78945	transcription start site region 78945	65 bp downstream
Tssr78946	transcription start site region 78946	22 bp downstream
Tssr78947	transcription start site region 78947	238 bp upstream
Tssr78948	transcription start site region 78948	290 bp upstream
Tssr78949	transcription start site region 78949	338 bp upstream
Tssr78950	transcription start site region 78950	385 bp upstream
Tssr78951	transcription start site region 78951	1136 bp upstream
Tssr78952	transcription start site region 78952	1228 bp upstream
Tssr78953	transcription start site region 78953	1249 bp upstream
Tssr78954	transcription start site region 78954	1295 bp upstream