rs36496087 SNP Detail

Summary

• ID
  rs36496087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44890401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGAGACGG GAGCAATAGC
  GCAGAGACAC AGAAAGGGCA GGGAAGGCCT CGTGGGTTCA CGATGTGGGA ACTGCCTTCC
  AGGGGGCCGG AGGGCCTGGG GAGGTCGCTA AGCTTCCATG CCGAGGCCTC CCGGACCTTT
  TCACCCAGAC AGCCGCTGGA GAGTTCAGCG GGGATCTCGA GGCCCGGGCG GTGAGACCGA
  Y
  GGGGCGGCCA TTGTGCTGCC CCAGGCTCTC CACAGGACGC CAGGAAGGAG GGAGGGAGGG
  GGGAGTCGCG AGGTCAAGGT CACCGTGCCC CCTCTCCGTC AGAACCCGGA AAACTGCCTC
  CTCGCTCCTC GGCTGCGCCT GCCTGAGGCC AGGCCTGAGA GTCAACCTCC CGCAACTCTT
  GACGGCTGCT CTATTGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51480353	NES13971400	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36496087					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480353	NES13971400	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44890401 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	1862 bp upstream
Cpgi19038	CpG island 19038	within coordinates
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	108 bp upstream
Tssr66503	transcription start site region 66503	97 bp upstream
Tssr66504	transcription start site region 66504	132 bp upstream
Tssr72353	transcription start site region 72353	1911 bp upstream
Tssr72354	transcription start site region 72354	1874 bp upstream
Tssr72355	transcription start site region 72355	1844 bp upstream
Tssr72356	transcription start site region 72356	1690 bp upstream
Tssr72357	transcription start site region 72357	1682 bp upstream
Tssr72358	transcription start site region 72358	1657 bp upstream
Tssr72359	transcription start site region 72359	1627 bp upstream
Tssr72360	transcription start site region 72360	1590 bp upstream
Tssr72361	transcription start site region 72361	1567 bp upstream