rs36496859 SNP Detail

Summary

• ID
  rs36496859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:94563330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATAGGGT GATGGGCACT
  TTCCTTGTCC AGTATCTTAG TGTGGATATG AAAGCAATCC CTTCTGCTCA GAGTTCTCTT
  CCTCTTGCAG TAGGCCTGTA CCTCTCATCC ACTCCCATGC AGTCTTGCCA GCACAGCGTG
  TGTGAGAGCT CGCCACACCA TCTTTGTGTC AGCATCCGCC CAGCTCACTG AGTTTGCCTG
  Y
  GAAAAACTGT GGGAGGCTGC GTGGGAGCGC CTGGCCTCTG ACCAGCAAGG ACTGGCCAGC
  TGCTGCTCCT GCAGCCTGGG CGTGCTAGCC ATGATGGCTC TGCAAACCGC CAACACTTGA
  TCCCTTCCAA CACTTGGGGT TTGGAGCAAA CTAGGGCCAG AACCTCTTGG CTCATATGTT
  AAGTTGGATC CTATAAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50776838	NES14220114	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	T	T		C
ss323093480	CHEV_9_94581696	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36496859					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50776838	NES14220114	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:94563330 () rs orientation: forward

Symbol	Name	Function Class
Rr383780	regulatory region 383780	within coordinates
Rr684730	regulatory region 684730	within coordinates
Slc9a9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	within coordinates