rs36500066 SNP Detail

Summary

• ID
  rs36500066
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75424097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTACTTT CCACTGTTAG
  CACTTCAGGC AAGGCAGAGC TCAGAGACCC TTAAAATGAA AGTTAATATC AATGTTGATG
  GCTTCTAGTA TCACTTGCCA GGTCTGCACC ATCTGAGGGG CTCCTAAGAC TTCAAGCAGG
  GAACTGGCAC ACAGAAGCCA AAACACGGGA CGCCAAGGTG TCTTAGAGAT AGGCCATGGC
  R
  TAAAACCTAG ATTGGCACTC ACACAACACA CAGAGTGTAT ACACAATCAA GTGTGACTTT
  GGGGTAGTGA CTATAATATT TCTTACCTAT AGACTAGAAA TTTACTCTGC TCCCTAAGAT
  AAGTTTCTAA AAGTTCTGAC CTTTGCATCG TTTTTACTGT CTACCCTTTC CTCTCCCCAA
  TTATCACCCC ATTTCCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51533032	NES14628124	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36500066					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533032	NES14628124	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75424097 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr495439	regulatory region 495439	within coordinates
Tssr4481	transcription start site region 4481	1759 bp downstream
Tssr4482	transcription start site region 4482	759 bp upstream
Tssr126634	transcription start site region 126634	624 bp upstream