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rs36500433 SNP Detail
Summary
  • ID
    rs36500433
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:5848233 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TATTTGGAAA TGTGGGGGAA
AAGTGTCTTA CCCTAGATGT TTAGCCATGG TCAAATTAGA CCCCTGACTT TCTGGAAACA
AAATATGTAG TTACCTTTTA CTCTGACCAT CATCTCCCAC CTGCCTAAGG TACTTAGTCC
TTAGTTAGAC GGCCTCTATG CCAGGCCTGC AATTATTAAA TGCTCATCAC TGCATGGAGA
R
TAAAATTTGT CTTTCCTGCC TTAAAGTTAA TTTCGGTCTT CTGGCTCAAA TCCTGATCTG
GTCCACTTAA GTGTTCGAAG TCAAGTTTCT GAAAAGATTA GAGAAGAACA TCCCCCCAAA
ATTGCCCACA CTAACTACAG ACAACAAACA AGACTTTATT TAAATAAGGA GACAGCCTTC
TAAATACATA CATTCTCTAG                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss50577494 NES13649162 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A A A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36500433 SNP A A A A A A A A A A A A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss50577494 NES13649162 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848233 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 795 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Rr543161 regulatory region 543161 within coordinates
Rr543162 regulatory region 543162 355 bp proximal
Rr543163 regulatory region 543163 1213 bp proximal
Tssr5415 transcription start site region 5415 1339 bp upstream
Tssr5416 transcription start site region 5416 890 bp upstream
Tssr5417 transcription start site region 5417 821 bp downstream
Tssr5418 transcription start site region 5418 1304 bp downstream
Tssr5419 transcription start site region 5419 1958 bp downstream
Tssr5420 transcription start site region 5420 1975 bp downstream
Tssr157645 transcription start site region 157645 1824 bp upstream
Tssr157646 transcription start site region 157646 1722 bp upstream
Tssr157647 transcription start site region 157647 1635 bp upstream
Tssr157648 transcription start site region 157648 1468 bp upstream
Tssr157649 transcription start site region 157649 1376 bp upstream
Tssr157650 transcription start site region 157650 1311 bp upstream
Tssr157651 transcription start site region 157651 1241 bp upstream
Tssr157652 transcription start site region 157652 1101 bp upstream
Tssr157653 transcription start site region 157653 1017 bp upstream
Tssr157654 transcription start site region 157654 963 bp upstream
Tssr157655 transcription start site region 157655 937 bp upstream
Tssr157656 transcription start site region 157656 904 bp upstream
Tssr157657 transcription start site region 157657 784 bp upstream
Tssr157658 transcription start site region 157658 678 bp upstream
Tssr157659 transcription start site region 157659 574 bp upstream
Tssr157660 transcription start site region 157660 478 bp upstream
Tssr157661 transcription start site region 157661 445 bp upstream
Tssr157662 transcription start site region 157662 352 bp upstream
Tssr157663 transcription start site region 157663 291 bp upstream
Tssr157664 transcription start site region 157664 177 bp upstream
Tssr157665 transcription start site region 157665 168 bp upstream
Tssr157666 transcription start site region 157666 136 bp upstream
Tssr157667 transcription start site region 157667 105 bp downstream
Tssr157668 transcription start site region 157668 152 bp downstream
Tssr157669 transcription start site region 157669 167 bp downstream
Tssr157670 transcription start site region 157670 187 bp downstream
Tssr157671 transcription start site region 157671 204 bp downstream
Tssr157672 transcription start site region 157672 253 bp downstream
Tssr157673 transcription start site region 157673 270 bp downstream
Tssr157674 transcription start site region 157674 300 bp downstream
Tssr157675 transcription start site region 157675 319 bp downstream
Tssr157676 transcription start site region 157676 330 bp downstream
Tssr157677 transcription start site region 157677 352 bp downstream
Tssr157678 transcription start site region 157678 364 bp downstream
Tssr157679 transcription start site region 157679 401 bp downstream
Tssr157680 transcription start site region 157680 456 bp downstream
Tssr157681 transcription start site region 157681 485 bp downstream
Tssr157682 transcription start site region 157682 503 bp downstream
Tssr157683 transcription start site region 157683 529 bp downstream
Tssr157684 transcription start site region 157684 545 bp downstream
Tssr157685 transcription start site region 157685 555 bp downstream
Tssr157686 transcription start site region 157686 570 bp downstream
Tssr157687 transcription start site region 157687 639 bp downstream
Tssr157688 transcription start site region 157688 689 bp downstream
Tssr157689 transcription start site region 157689 720 bp downstream
Tssr157690 transcription start site region 157690 798 bp downstream
Tssr157691 transcription start site region 157691 844 bp downstream
Tssr157692 transcription start site region 157692 898 bp downstream
Tssr157693 transcription start site region 157693 955 bp downstream
Tssr157694 transcription start site region 157694 1013 bp downstream
Tssr157695 transcription start site region 157695 1077 bp downstream
Tssr157696 transcription start site region 157696 1098 bp downstream
Tssr157697 transcription start site region 157697 1147 bp downstream
Tssr157698 transcription start site region 157698 1163 bp downstream
Tssr157699 transcription start site region 157699 1221 bp downstream
Tssr157700 transcription start site region 157700 1270 bp downstream
Tssr157701 transcription start site region 157701 1288 bp downstream
Tssr157702 transcription start site region 157702 1324 bp downstream
Tssr157703 transcription start site region 157703 1375 bp downstream
Tssr157704 transcription start site region 157704 1401 bp downstream
Tssr157705 transcription start site region 157705 1422 bp downstream
Tssr157706 transcription start site region 157706 1470 bp downstream
Tssr157707 transcription start site region 157707 1516 bp downstream
Tssr157708 transcription start site region 157708 1526 bp downstream
Tssr157709 transcription start site region 157709 1538 bp downstream
Tssr157710 transcription start site region 157710 1557 bp downstream
Tssr157711 transcription start site region 157711 1576 bp downstream
Tssr157712 transcription start site region 157712 1613 bp downstream
Tssr157713 transcription start site region 157713 1640 bp downstream
Tssr157714 transcription start site region 157714 1691 bp downstream
Tssr157715 transcription start site region 157715 1708 bp downstream
Tssr157716 transcription start site region 157716 1752 bp downstream
Tssr157717 transcription start site region 157717 1779 bp downstream
Tssr157718 transcription start site region 157718 1824 bp downstream
Tssr157719 transcription start site region 157719 1878 bp downstream
Tssr157720 transcription start site region 157720 1897 bp downstream
Tssr157721 transcription start site region 157721 1933 bp downstream
Tssr157722 transcription start site region 157722 1950 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory