rs36500843 SNP Detail

Summary

• ID
  rs36500843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:44691470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCATCACAC CCAGATGATT TTACTAATTT
  TTTGATCACT TTACTTTTAT AGGTAGGTGT GTATACATAT CTCATATACA TACGTGTTTC
  TACACTCATA ATTATACTTA ACCTTATCTG GAACTAAATT AAAAACCTTA TCTGCATTCT
  Y
  TGATTACACT TAAATAACCC TTATCAATTT AAATTTGATT TATTCTCTGA GAAACTAAAA
  CATATAATAA TAACTTATTT GAGATGTACT TCACTTTAAA CCAGAAACCT CCAGTGGGAG
  Gttttttttt tttttttttt tttACATAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss50949657	NES13945452	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	C	T	T		C	C	C
ss319707558	CHEV_1_44709155	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs36500843					SNP	C	T	C	C	T	C	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50949657	NES13945452	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44691470 () rs orientation: forward

Symbol	Name	Function Class
Gulp1	GULP, engulfment adaptor PTB domain containing 1	within coordinates
Tssr6574	transcription start site region 6574	142 bp upstream