rs36501191 SNP Detail

Summary

• ID
  rs36501191
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30172295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACCCCTA CACATCGAAT
  CTAGAGTCTC TGTTGCGAAT CTTCCCACCA GCGATTGGCC CAGCACGGAT CACTTATATC
  TCCATCGAAT GCTGCAAAGG CTGGGGCGGC TAGCCTCTCC ACTAGCTCAG GGCGTGGCCC
  AGCCTCCTGG TTGGCTAGTG AAATCTTAGG AGCCCCTCAA GCTGCTTTTG ATGCAGTCCA
  W
  GCTACCCAGG CATGCACCAA ACTCGAGTGT GCTCAGCTGT GCACAGCACA AGCACGTTCC
  CAGGGCCACT GGACCCCGTT AATACTCCTA GTGGAAAATA AGAATAAACG AAATCCTCAC
  AAGGGAGACT ATTACAGTGA AATTGTTTCT TCTTTGTGTA ATAATCTCCC ACCCACTGAC
  CCCCCTCACT GTTTGAAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51574665	NES14856885	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36501191					SNP	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51574665	NES14856885	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30172295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	620 bp proximal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Rncr4	retina expressed non-coding RNA 4	597 bp upstream
Rr146072	regulatory region 146072	1894 bp distal
Rr146073	regulatory region 146073	294 bp distal
Rr146074	regulatory region 146074	within coordinates
Tssr55327	transcription start site region 55327	564 bp upstream
Tssr60107	transcription start site region 60107	1780 bp downstream
Tssr60108	transcription start site region 60108	1804 bp downstream
Tssr60109	transcription start site region 60109	1821 bp downstream