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rs36501786 SNP Detail
Summary
  • ID
    rs36501786
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr19:5848677 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGTACATTG GAGCACATTT
AAATTTTAGC AATATGAACA TCTAATTTTC AGCACATAAT GATCCCTTTC ATGGGGTCTT
CAAGATAAAG ATTCCTTAAT CTTGTAAGCA ATGTAATTAA AGTAGGCATT AATCATGTAG
GCTTTTGTGT TGAAGTTTAC GATGCAAAAG CCTATTAGCT ATCCCATCAT GAAAGCCCAT
S
GGTGCAAGGC TTAGGAATTT TTAAGAGGCT GGATGGGAAA ACTACTCAAA ATTCTGAACT
GCCTAAGAGG GGCCAGCTGC AAACATTCAA CAGCTCTACA GGTCTTTTTG GAAAAAGAGA
AAAAAGGCAC TTATCTATCC CTAACATGCA ATACTGCAGA TCCAAGTTAC ACTTATCTGT
CAACAGCAGT CTGCTGTTTC                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss50577492 NES13649163 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C G C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs36501786 SNP C C C C C C C C C C G C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss50577492 NES13649163 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848677 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 351 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Rr543161 regulatory region 543161 284 bp distal
Rr543162 regulatory region 543162 within coordinates
Rr543163 regulatory region 543163 769 bp proximal
Tssr5415 transcription start site region 5415 1783 bp upstream
Tssr5416 transcription start site region 5416 1334 bp upstream
Tssr5417 transcription start site region 5417 377 bp downstream
Tssr5418 transcription start site region 5418 860 bp downstream
Tssr5419 transcription start site region 5419 1514 bp downstream
Tssr5420 transcription start site region 5420 1531 bp downstream
Tssr157648 transcription start site region 157648 1912 bp upstream
Tssr157649 transcription start site region 157649 1820 bp upstream
Tssr157650 transcription start site region 157650 1755 bp upstream
Tssr157651 transcription start site region 157651 1685 bp upstream
Tssr157652 transcription start site region 157652 1545 bp upstream
Tssr157653 transcription start site region 157653 1461 bp upstream
Tssr157654 transcription start site region 157654 1407 bp upstream
Tssr157655 transcription start site region 157655 1381 bp upstream
Tssr157656 transcription start site region 157656 1348 bp upstream
Tssr157657 transcription start site region 157657 1228 bp upstream
Tssr157658 transcription start site region 157658 1122 bp upstream
Tssr157659 transcription start site region 157659 1018 bp upstream
Tssr157660 transcription start site region 157660 922 bp upstream
Tssr157661 transcription start site region 157661 889 bp upstream
Tssr157662 transcription start site region 157662 796 bp upstream
Tssr157663 transcription start site region 157663 735 bp upstream
Tssr157664 transcription start site region 157664 621 bp upstream
Tssr157665 transcription start site region 157665 612 bp upstream
Tssr157666 transcription start site region 157666 580 bp upstream
Tssr157667 transcription start site region 157667 326 bp upstream
Tssr157668 transcription start site region 157668 285 bp upstream
Tssr157669 transcription start site region 157669 266 bp upstream
Tssr157670 transcription start site region 157670 250 bp upstream
Tssr157671 transcription start site region 157671 229 bp upstream
Tssr157672 transcription start site region 157672 179 bp upstream
Tssr157673 transcription start site region 157673 145 bp upstream
Tssr157674 transcription start site region 157674 133 bp upstream
Tssr157675 transcription start site region 157675 120 bp upstream
Tssr157676 transcription start site region 157676 105 bp upstream
Tssr157677 transcription start site region 157677 83 bp upstream
Tssr157678 transcription start site region 157678 69 bp upstream
Tssr157679 transcription start site region 157679 1 bp upstream
Tssr157680 transcription start site region 157680 12 bp downstream
Tssr157681 transcription start site region 157681 41 bp downstream
Tssr157682 transcription start site region 157682 59 bp downstream
Tssr157683 transcription start site region 157683 85 bp downstream
Tssr157684 transcription start site region 157684 101 bp downstream
Tssr157685 transcription start site region 157685 111 bp downstream
Tssr157686 transcription start site region 157686 126 bp downstream
Tssr157687 transcription start site region 157687 195 bp downstream
Tssr157688 transcription start site region 157688 245 bp downstream
Tssr157689 transcription start site region 157689 276 bp downstream
Tssr157690 transcription start site region 157690 354 bp downstream
Tssr157691 transcription start site region 157691 400 bp downstream
Tssr157692 transcription start site region 157692 454 bp downstream
Tssr157693 transcription start site region 157693 511 bp downstream
Tssr157694 transcription start site region 157694 569 bp downstream
Tssr157695 transcription start site region 157695 633 bp downstream
Tssr157696 transcription start site region 157696 654 bp downstream
Tssr157697 transcription start site region 157697 703 bp downstream
Tssr157698 transcription start site region 157698 719 bp downstream
Tssr157699 transcription start site region 157699 777 bp downstream
Tssr157700 transcription start site region 157700 826 bp downstream
Tssr157701 transcription start site region 157701 844 bp downstream
Tssr157702 transcription start site region 157702 880 bp downstream
Tssr157703 transcription start site region 157703 931 bp downstream
Tssr157704 transcription start site region 157704 957 bp downstream
Tssr157705 transcription start site region 157705 978 bp downstream
Tssr157706 transcription start site region 157706 1026 bp downstream
Tssr157707 transcription start site region 157707 1072 bp downstream
Tssr157708 transcription start site region 157708 1082 bp downstream
Tssr157709 transcription start site region 157709 1094 bp downstream
Tssr157710 transcription start site region 157710 1113 bp downstream
Tssr157711 transcription start site region 157711 1132 bp downstream
Tssr157712 transcription start site region 157712 1169 bp downstream
Tssr157713 transcription start site region 157713 1196 bp downstream
Tssr157714 transcription start site region 157714 1247 bp downstream
Tssr157715 transcription start site region 157715 1264 bp downstream
Tssr157716 transcription start site region 157716 1308 bp downstream
Tssr157717 transcription start site region 157717 1335 bp downstream
Tssr157718 transcription start site region 157718 1380 bp downstream
Tssr157719 transcription start site region 157719 1434 bp downstream
Tssr157720 transcription start site region 157720 1453 bp downstream
Tssr157721 transcription start site region 157721 1489 bp downstream
Tssr157722 transcription start site region 157722 1506 bp downstream
Tssr157723 transcription start site region 157723 1581 bp downstream
Tssr157724 transcription start site region 157724 1590 bp downstream
Tssr157725 transcription start site region 157725 1636 bp downstream
Tssr157726 transcription start site region 157726 1641 bp downstream
Tssr157727 transcription start site region 157727 1656 bp downstream
Tssr157728 transcription start site region 157728 1753 bp downstream
Tssr157729 transcription start site region 157729 1952 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory