rs36501982 SNP Detail

Summary

• ID
  rs36501982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:59997284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACATGTG ATAAAGTGCG
  ATTTCTACCA TCAATTAGGA AGACTCCGAA ATCAAACCCA GCTTTCCGGA TAACCGATCC
  CAGATTCTGG AAGTGGGAAG GACTTCGAAG CAGCCTCTCC AAGGTCAACC ACGTCACACC
  TCCGACCCTT ACTCTTGAGA TGGTCAGCTT CATTTCCAGC CATGCTAATA ATAGCCAAGG
  R
  AGAATCTGAC CATAACATAT CAAGGTCATT ACGGACGCTT GAGAAATCAA GCAGCCTGGT
  GATGGGAGGT GGCACAACTT CTTGTCCTGC CTGAATGCTC AACCACAAAG AGAAAGCATC
  AGCAGTCACA GCGAGGCAGG AGCTAACACG GGAGTACGAG CCACAAAGAG CACAGGACAT
  ATTTGTTTGC TATGTGGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52023977	NES15040321	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A	G	G	G	A		G	G	G
ss136530826	ENSMUSSNP5790297	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36501982					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52023977	NES15040321	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:59997284 () rs orientation: forward

Symbol	Name	Function Class
Rr196116	regulatory region 196116	1484 bp distal
Rr204367	regulatory region 204367	1527 bp distal
Rr209877	regulatory region 209877	within coordinates
Thsd4	thrombospondin, type I, domain containing 4	within coordinates