rs36502020 SNP Detail

Summary

• ID
  rs36502020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77386098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGGAGGA TAACATGTAC
  AAGAGGAGCA ATGAGTTCGT GAGTGCTCTG CCTGCCTTGG CACGCCCCGG TACCAAGGCT
  GGTTACATAA ACATAAAGGT TACAGGAGTG ACAACGGGAC AGGCTGAGAG CAGAGTCACA
  TTGCCCAATC ACACAAACAG AACCCAGACT CCTCCTAACA CGAATAACAA ATCACAGATG
  Y
  AGTCCCAGAG ACCCTGGTGA TAACATGAGA CTCCCAGCAC CCACATCAGC CTGCAGGGCA
  GTCCTCACCC TGATCCTCAT GGCAGAGGGC CTCACACAGC CTTCTCCATC CACCACACAG
  TCTCTTTGAG TGCCTGCTCT GCCTGCAATG ACCTTGTCAT AGCCCCAGGC CATCCCTGCA
  CACTCATTGC CTTCCCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50884847	NES14161840	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36502020					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50884847	NES14161840	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77386098 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itgb2	integrin beta 2			Intron
				Noncoding-Transcript-Variant
Tssr94240	transcription start site region 94240			1697 bp downstream
Tssr94241	transcription start site region 94241			1628 bp downstream
Tssr94242	transcription start site region 94242			614 bp downstream
Tssr94243	transcription start site region 94243			224 bp upstream
Tssr94244	transcription start site region 94244			621 bp upstream