rs36502162 SNP Detail

Summary

• ID
  rs36502162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22009447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAGAAAC TGAGTCACAG
  AAAGAACAAG AACATTAAAC AGTTCTTTAA CAGTCAACTT GAGCTGAAAT AACTGTGGCC
  AGAATCCCTG AAACGTTCCT CAGAAGCGCC AGGTAAGCGG CATCTCTTCT GTGCAAGAGC
  CTCTGAGGTT CTTGTGCGGG TTAATTATCT ATTTCCAATC TCGGTGACTG TAAATGGAGT
  Y
  AGAGAGTTTG TGTGTTAGGA AATTCTACAT CATATCTTGT GATAGCAGCA GAAGAAATGA
  ACTTGGGATA AAAAGCTTTT CAGATACAAA TAGTACAGCA AACTCTTGAG GAATGCCAGG
  TGTGTTCACA TTGTGGCACT ATTATTAGCC AAGACTCTCA CTGTTTTCCT AACTGCAGTC
  AGGTGCAAAG AAAAAAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51434222	NES14436543	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36502162					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434222	NES14436543	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22009447 () rs orientation: forward

Symbol	Name	Function Class
Gm31813	predicted gene, 31813	within coordinates
Rr397621	regulatory region 397621	1378 bp downstream
Rr574172	regulatory region 574172	1474 bp distal
Rr574173	regulatory region 574173	390 bp proximal
Rr574174	regulatory region 574174	1908 bp proximal
Tssr28575	transcription start site region 28575	195 bp downstream