rs36502262 SNP Detail

Summary

• ID
  rs36502262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92088713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACAACTC TGGGAATATA
  CTGTCCAACT GTGAATGTAC TCAGAACTGT TGAGTAGTAT GCTTGAAGTA GGTGAGTTTC
  ATTATGTTAA TCCCATCGCA GAGATGTTTA TGTAATTCTG CGGTGACTGT CTTATTTCCT
  AAAGACACTT GCTGGCTCTT TGTCCTGTTT ATAAACAGCT ATGACTTGAG TCTCAACGTT
  R
  TATTTTACCT TCTTTCATTA ACATCTTCAG AAAAGATCGA CAGTCAAATC CCTTTTGACC
  CATCTGTTCT ATTTATAAAA GCTCACTAGA CTCTACTAGC AAACGTATAG GTCTGTAAGA
  AAATATGTTG TGGTGTTACA TGTAGTCACA AAGCATAACA AACAGCTTGG AAAACCATTA
  GTAGGGAACA TGTTAGGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50605137	NES14041026	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36502262					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605137	NES14041026	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92088713 () rs orientation: forward

Symbol	Name	Function Class
Fto	FTO alpha-ketoglutarate dependent dioxygenase	within coordinates
Rr178622	regulatory region 178622	1288 bp proximal
Rr191071	regulatory region 191071	114 bp distal
Rr191072	regulatory region 191072	1289 bp proximal
Tssr78731	transcription start site region 78731	1176 bp upstream