rs36502300 SNP Detail

Summary

• ID
  rs36502300
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68791145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGCTGAG GAAACGGAGG
  TTAAAGAAGT GAGAGGTTTA TATGGTGCGT ATCTCTCCAG ACCTCCTGCG TCCCTGGCTG
  CCAGAGGTCC ACATGACTCT CTTCTCTCCC ATCTCATGTT CCCAAACCTC TCATAAGAGT
  TTGGAGATGT ATTTAGCAAC AGTATCACGT GCCCTTTGCC TTTCCTTCTC TGCCTTCTGA
  M
  CAGCCGCTCT TTACCCAACT CTCCCCCACC AGATTTGTCA TCAGTCAGCC AGTTATCGAT
  TCCTTATCCA TTTCGCCCTC AACTTTGACC CGCTCAGAGA GTTTGCTGAC ATCATCTGCC
  CCACTTACCC CCACATCATC ACCTTTGAGC TGAGATCTGG AACTTTCTTT GATGTCATCG
  GCCTTGTCTT ACCCTGACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50732150	NES14251866	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	C	A	A	A		C	A	A	C		A
ss322996733	CHEV_9_68731670	CHEVERUD	SCREENING_POP	f	SNP										A					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36502300					SNP	A	A	A	C	A	C	A	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50732150	NES14251866	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68791145 () rs orientation: forward

Symbol	Name	Function Class
D9Mit158	DNA segment, Chr 9, Massachusetts Institute of Technology 158	1595 bp distal
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682079	regulatory region 682079	1280 bp distal
Rr682080	regulatory region 682080	within coordinates
Rr682081	regulatory region 682081	576 bp proximal
Tssr85829	transcription start site region 85829	1014 bp downstream