rs36502732 SNP Detail

Summary

• ID
  rs36502732
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:51642467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCTAGA GGCTAATATG
  AACCGAATGC TTGTACAAGA TGCCAGCTGT CATACTCAGT CTCAGTTAAC ACTCACAGAG
  ACTCAGTCGC TGACTTGAAC TTGAATTTGT CTAACATCAA AGCCAGGTTT TATATAACAT
  CACCAAGATA TGCTGCCTTT TTTTTATCCT AATAGTGTAC TTTTATTTAT ATTTCTGCTG
  Y
  TTATAAAGTG TTTAAACTCA AGTTGAATTG CATGCAGTTG CCATTATTTT TGTAGGACAC
  AAATGGTTAA ATACTATAAA TACTGTATTT CTACTTGTAA TTTGTTCCTT GGAGTAGAAA
  AGTAATCTCA TTGAGTAGTT AGGAACGTAA CCTGAACACT GAAGAATGAC CTAGGACACA
  GAACAGTCCT GGCAATCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51115392	NES13865340	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36502732					SNP	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51115392	NES13865340	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:51642467 () rs orientation: forward

Symbol	Name	Function Class
Gm42614	predicted gene 42614	820 bp upstream
Ppargc1a	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	within coordinates