rs36502805 SNP Detail

Summary

• ID
  rs36502805
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44148905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTCTGT CCCCTCATCT
  GGCACATGTG GTAACAGGAC AGTTCTTCCT GAAGCACATG GCACAGCATG AGCAGTGTGC
  AAATGTCAAT GAGAGCTGTT CAATTTCAGG GAAATCCATC GTCCACTGTG GAACACCATG
  AAGCAGAGGG CATGTGCTTT GTGTATTTGT GTGCACAGGA GCAAAGAGGT TGGACACATC
  R
  GGTCCTGTAA GCAATAGAAC CAGGCCAGAG GAGGGTGCAG TGACCCCTTG CTGTAGCTAA
  CAAACCCCAG AGCTATGAAT ACAGGCTTTG TTTCCATCCC TTGCAGTGTG GCCTGAGCCA
  GGTTACTCTT TCCAGACTGT ATCTTCCTTT CCTTTGTTGG ACCTTGAATC TAGCTGAAAG
  TGTGAGCAAT TCATTTATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51891400	NES14911129	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36502805					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891400	NES14911129	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44148905 () rs orientation: forward

Symbol	Name	Function Class
4921540A03Rik	RIKEN cDNA 4921540A03 gene	1758 bp upstream
Cpgi18970	CpG island 18970	558 bp proximal
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Rr380742	regulatory region 380742	1406 bp downstream