rs36504370 SNP Detail

Summary

• ID
  rs36504370
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90174529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCTTTAAA GGAATAGGTG AGGAATATGT CAGTTGTGTG
  TTGTAGAGTG GAGTTTGGGT TCTTTGGGAA AAAAGGGCTG ATGTCACTAA GAAGGAAGGA
  S
  CTAGTGGTCT CTAAGGAGCT GTGGTGGAAT ATGAGAGTTT GGTGATGTCA CAGGTGGAAG
  AATTCAAGAT TGGCTGATCA TTTATCCTTT CCTTAGAAGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss50992058	NES13923867	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs36504370					SNP	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50992058	NES13923867	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90174529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13456	CpG island 13456	1027 bp distal
Dennd4b	DENN domain containing 4B	within coordinates
Gm65083	predicted gene, 65083	826 bp upstream
Rr580322	regulatory region 580322	837 bp distal
Rr580323	regulatory region 580323	1805 bp distal
Rr580324	regulatory region 580324	698 bp distal
Rr580325	regulatory region 580325	350 bp distal
Tssr30185	transcription start site region 30185	1284 bp downstream
Tssr30186	transcription start site region 30186	1255 bp downstream
Tssr30187	transcription start site region 30187	721 bp downstream
Tssr30188	transcription start site region 30188	656 bp downstream
Tssr34202	transcription start site region 34202	1647 bp upstream
Tssr34203	transcription start site region 34203	825 bp upstream