rs36505025 SNP Detail

Summary

• ID
  rs36505025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135257983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCTATCT ATCTATCTAT
  CTATCTATCT ATCTATCTAT CTATCTATCT AGGTTTTACT CTTACCACAT GTGTGTGTCA
  TCAGAGGAGA GCTTGTAGGA GCTGGTCCTC TCCTACTGCT GGAGTTCTGG GAATCCAACT
  GTCAGGCTGG GCAGCAAGTG CCTTTCCCAG TTGGGCCATC CTCCTGATCC TGAATTGATA
  Y
  GTTCTATGCA GTCTAATCAT CTATAGCTAT AGAACTGGAT ACTCAACCAC ATTAGAGGAA
  ATGAACAGGA GAAGCAAGTC CTAGTCTGTA TTACCCAGTT TCATTTTCTC CTCCTCCTCC
  CTCATGTCTG CCTTTTATTT CTCATGTTGT TTCTTCTTCT TCCTCTTCCT CTTCTTCTTT
  TCCTTCTCCT CCTTCTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51651425	NES14650427	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36505025					SNP	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51651425	NES14650427	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135257983 () rs orientation: forward

Symbol	Name	Function Class
Manba	mannosidase, beta A, lysosomal	within coordinates
Tssr31836	transcription start site region 31836	938 bp upstream
Tssr35788	transcription start site region 35788	1752 bp upstream