rs36505197 SNP Detail

Summary

• ID
  rs36505197
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19279885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGAAAAAC AGTCTCTCCT CATTTTGAGT ACGGGACAGA
  ATCGGGTTTT TAAGCCTCAC GCCGACTGGG ACTTTAATTT TTGCTTTTTA AACTTTTAAT
  W
  TTTTTTTTTA AATCGGTAAC CAACGTACGC AGGTAGAGGG TAGATATCTA GGGAGAGCGA
  GGGGAAAGGA GGGATGTATG AACAAATCCA GTACCGTATG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ
ss50916962	NES13479766	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ
rs36505197					SNP	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916962	NES13479766	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19279885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	20 bp proximal
Rr408237	regulatory region 408237	1771 bp distal
Rr408238	regulatory region 408238	691 bp distal
Rr408239	regulatory region 408239	within coordinates
Rr408240	regulatory region 408240	1903 bp proximal
Tfap2b	transcription factor AP-2 beta	within coordinates
Tssr6030	transcription start site region 6030	694 bp downstream
Tssr6031	transcription start site region 6031	667 bp downstream
Tssr6032	transcription start site region 6032	650 bp downstream
Tssr6033	transcription start site region 6033	628 bp downstream
Tssr6034	transcription start site region 6034	608 bp downstream
Tssr6035	transcription start site region 6035	572 bp downstream
Tssr6036	transcription start site region 6036	560 bp downstream
Tssr6037	transcription start site region 6037	535 bp downstream
Tssr6038	transcription start site region 6038	508 bp downstream
Tssr6039	transcription start site region 6039	484 bp downstream