rs36505611 SNP Detail

Summary

• ID
  rs36505611
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69540984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCGCTAGC TAATTTTATC
  ACAGCCAAAG AAAAGAAACT AGAACCCTTT GTGCGTTCTA ACCTCTTAAC TGGTTTTCCA
  ATCTGTTCCT AAGGTGGTCT TCCACACCAT ATACTCTTCG GATATGCAAG AAAGCCAAGT
  CTGTTCGAAA AGATCCACGA AAAAAAAAGA ACTTGGTAGT AGGATAAACT GAAATAAATT
  K
  CGACACAAAG TTACCAATCA TGGGACTAGG TTTTCTATCT TCTGCTTTCC AAGGTGTTTT
  CCACAGCTTG ATTATGAACC TCAGTTGTCT GTATTTTCTT ATGCACGTTT TCCTATCTCT
  TCCTTCCCTA CATTCCAATG AATCTTTCTT TTTCTCGTGA ATCCTCTCTC TTGTGTCAAT
  TTTGCCCTCT GGCCCCTTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50565151	NES14071377	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36505611					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50565151	NES14071377	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69540984 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	404 bp upstream
Cpgi20406	CpG island 20406	171 bp proximal
Rr400869	regulatory region 400869	154 bp upstream
Rr664484	regulatory region 664484	within coordinates
Rr664485	regulatory region 664485	880 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	within coordinates
Tssr77656	transcription start site region 77656	384 bp upstream
Tssr77657	transcription start site region 77657	401 bp upstream
Tssr77658	transcription start site region 77658	421 bp upstream
Tssr81518	transcription start site region 81518	868 bp downstream