rs36506770 SNP Detail

Summary

• ID
  rs36506770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8998547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTAGGGG CTTTGCTTAC
  ATCTAACTTT GTGAAGACCT CTGACTCATT CAGTTGTGGA AAATGCATAT TTTGGCACTC
  ATTTTAGAGT CCAAAGAGAT CTGGAACAGA CAGTGTGGCA TTTGACTTGA TGGACACCTA
  AACGCCACAC CTCACCAGGC TTTCCATGAA TAATCTTTAA AAGCATTTCA GATTGACTAC
  Y
  CAGCCAGACG ATTGATACAA ATAGACCAAC TACTACTCTA TCCCCTTGAT AAGGACAACA
  GAAGACACTA GTGGGAAAGG CTGTGAGCTG ATGACACCAG CATCACCCTG CCCCTCCCCC
  AGGCTAAGAA CTTTCCAAAC GCATCTAACT CCTTGCAGCC TGTCATGGAT CTAGGATATA
  CAGTGCATAA GAGCCTCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51571783	NES14613470	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36506770					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51571783	NES14613470	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8998547 () rs orientation: forward

Symbol	Name	Function Class
Ranbp3l	RAN binding protein 3-like	within coordinates
Tssr130603	transcription start site region 130603	1127 bp downstream
Tssr130604	transcription start site region 130604	1103 bp downstream
Tssr130605	transcription start site region 130605	1081 bp downstream
Tssr130606	transcription start site region 130606	1052 bp downstream
Tssr130607	transcription start site region 130607	770 bp downstream
Tssr130608	transcription start site region 130608	695 bp downstream
Tssr130609	transcription start site region 130609	671 bp downstream