rs36506884 SNP Detail

Summary

• ID
  rs36506884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:23115159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCTGGAT ACTGGGACCC
  TTATGATGGA AGAGTAAGAG TTTGGGAATG TTTATTGGTG GGGGAGCTTT TTAAGATGGA
  GCTGGGGAGA CGATATTATA TTTGCAGGGT TTTCTTTTTC TTTTTTTCCT CTTAAGCATG
  GCACGTGTGT TATCAATGAA GAAAATTGTC GCTGAGGTAG AGGTGACATG GGAGAGGGAA
  Y
  AGAGTTAAGT CTTCACGAGA GCCTGGTCTG CTTTGTAGAA TAGCTTTGTG CATATAATCT
  CATTTAATCA GTGGAAAAAC ATCCCGAGAC TTGTGTTACT ACCACATGCT TGCACAGAAG
  TAAAAATCAA GTTACAGTGG ACTAAGGATA GAGAGTGCCC GAGGTGTGCA GCAGGTATGG
  GACCACGAGG CCAATATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51994669	NES15009130	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36506884					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51994669	NES15009130	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:23115159 () rs orientation: forward

Symbol	Name	Function Class
Gm68239	predicted gene, 68239	501 bp upstream
Rr675323	regulatory region 675323	406 bp proximal
Rr675324	regulatory region 675324	512 bp proximal