rs36507234 SNP Detail

Summary

• ID
  rs36507234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA ATAACAAAGA CCCCAATACA
  Y
  GGCCCACAAT CTGGCCCATT CTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677573	NES14010814	PERLEGEN	MM_PANEL2	f	SNP		T	C	T	T	T	T	C	C	T	T	T	T	T	T
ss136330460	ENSMUSSNP688099	ENSEMBL	ENSEMBL_Sanger	f	SNP	T							C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36507234					SNP	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677573	NES14010814	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	874 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1816 bp distal
Rr676840	regulatory region 676840	987 bp distal
Rr676841	regulatory region 676841	1385 bp distal
Rr676842	regulatory region 676842	1440 bp proximal
Rr676843	regulatory region 676843	1811 bp proximal
Tssr84449	transcription start site region 84449	1920 bp downstream
Tssr84450	transcription start site region 84450	1331 bp downstream
Tssr84451	transcription start site region 84451	414 bp upstream
Tssr84452	transcription start site region 84452	442 bp upstream
Tssr84453	transcription start site region 84453	1183 bp upstream
Tssr88934	transcription start site region 88934	1857 bp upstream
Tssr88935	transcription start site region 88935	1806 bp upstream
Tssr88936	transcription start site region 88936	1785 bp upstream
Tssr88937	transcription start site region 88937	1721 bp upstream
Tssr88938	transcription start site region 88938	1464 bp upstream
Tssr88939	transcription start site region 88939	1429 bp upstream
Tssr88940	transcription start site region 88940	1397 bp upstream
Tssr88941	transcription start site region 88941	1108 bp upstream
Tssr88942	transcription start site region 88942	1093 bp upstream
Tssr88943	transcription start site region 88943	1065 bp upstream
Tssr88944	transcription start site region 88944	1017 bp upstream
Tssr88945	transcription start site region 88945	1000 bp upstream
Tssr88946	transcription start site region 88946	904 bp upstream
Tssr88947	transcription start site region 88947	875 bp upstream
Tssr88948	transcription start site region 88948	845 bp upstream
Tssr88949	transcription start site region 88949	231 bp downstream