rs36508596 SNP Detail

Summary

• ID
  rs36508596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65443160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCTGTG TGGAGCCATC
  ATGGGAATCA ATAGCAGTCA TTCATTTACT TTTCTGGCTT TTCATCAATA AGTAGGTTAC
  TTCTGAAGCA GCTGTCACCT GGCTTCAGGT TGAGGTCAGG CTTTTCCTGA TGTAATAAAA
  ATGAATCTTG GAAAAAGCAA CAATTTCTAA TTATTCAGAA GGTTGGGGGA TAAAAGGCTA
  Y
  CTGGCAATTC CTGACTATAA TTGCATGATA CATAATATAT TTTATTATCC AGTTGAATCC
  AAAGCTTTTA GTTATTATTG TACATGAAAA AGATACTAGT GATATGAAGG TGTAAAGAAA
  AACTCAGGAA TACAAGATAC TTTTGATTAA TTCTTCTGTC ATCCTATAAA CCTGTTTTGT
  TTTTCTCGTT ACACTAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50966532	NES13931807	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36508596					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50966532	NES13931807	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65443160 () rs orientation: forward

Symbol	Name	Function Class
Rr577699	regulatory region 577699	1812 bp distal
Rr577700	regulatory region 577700	1646 bp proximal
Tiparp	TCDD-inducible poly(ADP-ribose) polymerase	Intron