rs36509541 SNP Detail

Summary

• ID
  rs36509541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129204984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACACCCTT ATGAGATGGC
  AAGGGATAAG TAACCAGATT AATAGGTAGG GAGAGGACTT GAATAGATGT TTACTCAAAA
  GACATACAAA AATGGATGAC AGATGTATGA AAACATATTC AACACTAATC ACACTAATCA
  CAAACTGTTA CTTTTCAAGG TCTCTACAAA ATACAACCAG TAACTTGTAG CTTAAGGGAG
  R
  TGATAGACAA CAAGCTTGAT CTTGAGTGGT ATCATAATTG ACTACACAGG CATTTTCATC
  ATCTGTTAAG CAATACAGAT TTGGTTTTGG CAATGAATTT AGATCACAGG ATTTGCTGTG
  AAAGAGTATT TTCTGTAAGA TTATCTCATG TGAAATATGG TCAAGATAAT CTAAATTTTT
  CAAGAAATTT TCTTTTCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51418751	NES13704019	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs36509541					SNP	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51418751	NES13704019	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129204984 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	258 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	1306 bp upstream
Tssr59119	transcription start site region 59119	1355 bp upstream
Tssr59120	transcription start site region 59120	1374 bp upstream
Tssr63549	transcription start site region 63549	1066 bp downstream
Tssr63550	transcription start site region 63550	1216 bp downstream