rs36510366 SNP Detail

Summary

• ID
  rs36510366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61006604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAGCAGA CCTGTCCCCA
  GCACTTGGAG TGCTGGGGCA GGACCATGAG TTCTAAGCCG GTCTGAGCTG CATAGAGAGA
  CCCTGACTGG GAAAAGTGTT CCCTTGATTT CTGTTAAATG TTCGTGTGTG GGGTCTGCAT
  AAGGATTATG AAGTGTTTGC GGGGGGGGGG GGGGCATAAG GAACCTGGAA TGTTTGAGAA
  Y
  ACATGGCTGT AAATTAGAGA AAATCAGAAG AGGTACCAAA AATGGCTTTT TAAAAAAAAA
  AAACAATGTG TGTGGGTGTT ATGCCTGCAC TGTGTGTACC ACACTGGGAG CCAGGAAAGG
  GCGTCTCATC GTCTACAAGG GCTTCGAGAG CCTCCTGGTA CTGGAAGATC AGCCATTTCT
  CCACCCACTA AGTGGCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51523292	NES14633430	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36510366					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51523292	NES14633430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61006604 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf9	C1q and tumor necrosis factor related protein 9	within coordinates
Gm34997	predicted gene, 34997	1112 bp upstream
Rr289661	regulatory region 289661	197 bp proximal
Rr289662	regulatory region 289662	1597 bp proximal
Tssr125961	transcription start site region 125961	1061 bp downstream
Tssr125962	transcription start site region 125962	1037 bp downstream
Tssr125963	transcription start site region 125963	1018 bp downstream