rs36512082 SNP Detail

Summary

• ID
  rs36512082
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127585135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGTAGCTT CTCATCTGTG
  GTATTTGCAA CCAATCAGCC TTGTGCAAAA ACAAAGCCCG GTAGTCCTTC ACTGGTTTCA
  CAGGACACAG GGGTCAGTTA GGAGCAGCTT GTCCCGCGTG CGCAGCTGGG TTGTCAGTGC
  TGCGGTGTAC CTAACACACC GACACAGACC CCTCTTTTTT CTCCCAGGAG AGGAGACAAG
  S
  CTCAGGAGTC CTGATCTAGC TGTGGCCACT GGAAGACTCT CAGGTGAGTG TGTGCATCTT
  GGTATCCAGC ACGCAAAGGG TTAAGCCTGG AGAGTTGGGG GGGGGGGGGT TGGAGGAATT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTAGGGGG GGGTGAAGAG
  CCATGCCTTT GGCTCCTGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51618290	NES14659885	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36512082					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618290	NES14659885	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127585135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	1358 bp distal
Cpgi13801	CpG island 13801	537 bp distal
Gm56817	predicted gene, 56817	1229 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	1564 bp distal
Rr584861	regulatory region 584861	1667 bp distal
Rr584862	regulatory region 584862	1240 bp distal
Rr584863	regulatory region 584863	672 bp distal
Rr584864	regulatory region 584864	within coordinates
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31599	transcription start site region 31599	1677 bp downstream
Tssr31600	transcription start site region 31600	1609 bp downstream
Tssr31601	transcription start site region 31601	1557 bp downstream
Tssr31602	transcription start site region 31602	1503 bp downstream
Tssr31603	transcription start site region 31603	1485 bp downstream
Tssr31604	transcription start site region 31604	1361 bp downstream
Tssr31605	transcription start site region 31605	847 bp downstream
Tssr31606	transcription start site region 31606	661 bp downstream
Tssr31607	transcription start site region 31607	437 bp downstream
Tssr31608	transcription start site region 31608	341 bp downstream
Tssr31609	transcription start site region 31609	302 bp downstream
Tssr31610	transcription start site region 31610	209 bp downstream
Tssr31611	transcription start site region 31611	96 bp downstream
Tssr35598	transcription start site region 35598	1728 bp upstream
Tssr35599	transcription start site region 35599	1646 bp upstream
Tssr35600	transcription start site region 35600	1618 bp upstream
Tssr35601	transcription start site region 35601	1585 bp upstream
Tssr35602	transcription start site region 35602	1268 bp upstream