rs36512287 SNP Detail

Summary

• ID
  rs36512287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96358733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTGTGTGA GTGCATATGT ATGTGTGCCC ATGGAGGCTC
  TCTTCTGCCA GCCAGTATCC AGGCTGTTTC CAGAGGCAGA GTTTGTCACT GGACCTGGAG
  Y
  TTGCGGATCC CACTGTCTCC AGTGAAGCCC CTGGAGGTGG GAGGTGTTGC ACTGTGTTTA
  CCCAGCTTTT ATGTGGCTGC CAGGAATCTG AATTTCACCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51771845	NES14721799	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36512287					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51771845	NES14721799	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96358733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	463 bp distal
Gm72185	predicted gene, 72185	806 bp upstream
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	622 bp downstream
Rr614892	regulatory region 614892	1963 bp distal
Rr614893	regulatory region 614893	1371 bp distal
Rr614894	regulatory region 614894	833 bp distal
Rr614895	regulatory region 614895	720 bp distal
Rr614896	regulatory region 614896	within coordinates
Tssr47395	transcription start site region 47395	1386 bp downstream
Tssr47396	transcription start site region 47396	1111 bp downstream
Tssr47397	transcription start site region 47397	713 bp downstream
Tssr51962	transcription start site region 51962	848 bp upstream