rs36512871 SNP Detail

Summary

• ID
  rs36512871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97872286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGGGAAGG GGTTAAGAGG AAAGCGTGAC TGTCTTGCTT
  AGGTGATGTA CCAGGTATCT TTTGAAACTC GTTTCACAAA ATACAGCTGT CATGGAGTGT
  R
  TCTCCCTTCT CAGTTCGCAC ATCCCCACCA CTGTATGCCT CTAGTGGAGA AGGGAACGAC
  ACGCCCATTT CACACCCAAG GCATTGGGGA AAAAAGGGTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51763593	NES14551309	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36512871					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763593	NES14551309	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97872286 () rs orientation: forward

Symbol	Name	Function Class
Col2a1	collagen, type II, alpha 1	1197 bp downstream
Rr508999	regulatory region 508999	612 bp distal
Tssr132910	transcription start site region 132910	1198 bp upstream
Tssr136189	transcription start site region 136189	1263 bp downstream
Tssr136190	transcription start site region 136190	1294 bp downstream
Tssr136191	transcription start site region 136191	1507 bp downstream
Tssr136192	transcription start site region 136192	1613 bp downstream
Tssr136193	transcription start site region 136193	1655 bp downstream
Tssr136194	transcription start site region 136194	1703 bp downstream
Tssr136195	transcription start site region 136195	1719 bp downstream
Tssr136196	transcription start site region 136196	1738 bp downstream
Tssr136197	transcription start site region 136197	1751 bp downstream