rs36514564 SNP Detail

Summary

• ID
  rs36514564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83484619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGCTAT CAGTCTTGGC
  AGCTAGTGTT TTTACCTGCT GAGCCGTCTC ACTGGCCCTA AGATAAATGC CTTCTTCCTC
  CATACTTTGG GACTTTATTG CCTACAGGAA GAGACTGGAC TGTTTTAAGC AGGAAGGGAA
  CAATCCAATA ACTTACACAA GTAATGTTTC GCATCCTGTG TAACTGTCAG CACAATGTTG
  R
  ACCATTTATT TTATCACACC CCATTTTATT TTGACCTTTA AATAGGTAAA TGTTCACTTG
  GAGGAATCTC ATCAGGATAA CGAGTTGGAT TAAGCATGGT ATTGGCTCTG TAAGAATGAA
  TCCTGGAGAG GAGACATGTA CAGGACTATA TGCAGTGAGT GAGGGGAGAG GAGGCATGGA
  AGAGACTTTC TGAAACATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354493	NES13746104	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36514564					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354493	NES13746104	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83484619 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	251 bp distal
Dguok	deoxyguanosine kinase	732 bp upstream
Rr399724	regulatory region 399724	459 bp downstream
Tssr1908	transcription start site region 1908	531 bp downstream
Tssr61663	transcription start site region 61663	1377 bp upstream
Tssr61664	transcription start site region 61664	814 bp upstream
Tssr61665	transcription start site region 61665	802 bp upstream
Tssr61666	transcription start site region 61666	787 bp upstream
Tssr61667	transcription start site region 61667	761 bp upstream
Tssr61668	transcription start site region 61668	743 bp upstream
Tssr61669	transcription start site region 61669	710 bp upstream