rs36514806 SNP Detail

Summary

• ID
  rs36514806
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTACAAGC ACATGTTCTG
  TAATCTGATT CAACCTACCC AGTAAACTTG GCGAAGCAAA GTAGAATCAT TATCACAGGA
  AGCAAAGGCA ACCTAAATGT GCAAGCAATA GGAAAATGTG GAAGCCCATC ATAGTACTTG
  GACTTCATCT GCTTTTGTGC CTTCACTAAG TTTTTAAACA TGAGCTGGCT CCTATCTGCC
  M
  TTGGCAAGGC TGGGCACTAC CCACAACCTA CTTCAAGGAC CTCTATACCG TGAGATTACA
  CACATACATC AAAATTTGGG AAAAGTTCTA CCAAGCTGAG AGCTGATCAC CCCACTCTTA
  GGTGCTTATC TCTGTACACC AGAAACCTTA AGAAGCAACC AGTATTGAGA GACTCATTTA
  TGAAAGTCTA AAACTGGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676629	NES14820458	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	A	A	C	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36514806					SNP	A	A	C	A	A	A	A	A	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676629	NES14820458	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704432 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1765 bp upstream
Gm68839	predicted gene, 68839	482 bp upstream
Igk	immunoglobulin kappa chain complex	694 bp downstream
Igkc	immunoglobulin kappa constant	694 bp downstream
Rr158	regulatory region 158	1497 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399685	regulatory region 399685	1601 bp downstream
Rr399686	regulatory region 399686	637 bp downstream
Tssr1880	transcription start site region 1880	597 bp downstream
Tssr56956	transcription start site region 56956	1615 bp downstream
Tssr56957	transcription start site region 56957	976 bp downstream
Tssr56958	transcription start site region 56958	960 bp downstream
Tssr56959	transcription start site region 56959	942 bp downstream
Tssr56960	transcription start site region 56960	927 bp downstream
Tssr56961	transcription start site region 56961	911 bp downstream
Tssr56962	transcription start site region 56962	899 bp downstream
Tssr56963	transcription start site region 56963	852 bp downstream
Tssr56964	transcription start site region 56964	841 bp downstream
Tssr56965	transcription start site region 56965	829 bp downstream
Tssr56966	transcription start site region 56966	821 bp downstream
Tssr56967	transcription start site region 56967	801 bp downstream
Tssr56968	transcription start site region 56968	771 bp downstream
Tssr56969	transcription start site region 56969	747 bp downstream
Tssr56970	transcription start site region 56970	728 bp downstream
Tssr56971	transcription start site region 56971	716 bp downstream
Tssr56972	transcription start site region 56972	657 bp downstream
Tssr56973	transcription start site region 56973	646 bp downstream
Tssr56974	transcription start site region 56974	616 bp downstream
Tssr56975	transcription start site region 56975	579 bp downstream
Tssr61321	transcription start site region 61321	939 bp upstream
Tssr61322	transcription start site region 61322	791 bp upstream
Tssr61323	transcription start site region 61323	710 bp upstream
Tssr61324	transcription start site region 61324	633 bp upstream
Tssr61325	transcription start site region 61325	600 bp upstream
Tssr61326	transcription start site region 61326	587 bp upstream
Tssr61327	transcription start site region 61327	561 bp upstream
Tssr61328	transcription start site region 61328	483 bp upstream