rs36515596 SNP Detail

Summary

• ID
  rs36515596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68733876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTGCAGG CTGGTCTTGA
  ACTTCAGACC CATCTACCTC AGCCTCTGGA GAAGGTAGGA TGACGCAACT GCTTTCGATG
  TGCCTGGCTG GGTTGTGAGC TCCAAGCCTG ACCCTTACCC TTCTCATTGC CCCCCCACCC
  CGGTCTCCAA CTCTCTAAGA GAAGACATCA GATCTGCTTG CTTCTTAGGA TGATGCCTGG
  Y
  GTCTGTGCTA ATGCACGTTG CTGTGCATCT GGGAGAACCC TTGTGTGGAA AACAGGAGCT
  CTTAGCAAAA ATCTTCCCTC CGTGCCCTTT TCTCTTCTCA AACATAGCCT GGGCAAGTAT
  AAGAGCGGCC ACTGAGGATG AAGATGCTGA TGGCCTCTAA CCACCGGCCT CTGCAGGTCT
  CCCTCCCATC TTCATCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50732744	NES14244250	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	C		C	C	C		C
ss322996589	CHEV_9_68674401	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36515596					SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50732744	NES14244250	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68733876 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr383535	regulatory region 383535	1102 bp upstream
Tssr85828	transcription start site region 85828	1802 bp downstream