rs36516009 SNP Detail

Summary

• ID
  rs36516009
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35024570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAGTAAA TTGAGTCAAA
  AAAACAAAAA ACAAAAAACA AACAAAAAAA ACAAAACAAA ACAAGACCAA AAAAAACCCA
  CCTCATGTAA TCCAGGCTGG CCTACAGTCT TTGAACTCCT GGTCCTCCTG CCTCCACCTC
  AGAAATACTA GGATTACATA GATGAACCAC CATTCCCAGC CCTACGTCCC TTCTTTATTC
  K
  AAGAGTGTGC TTCAGTGGTA TGGGACAGAG GGTAGACTGT GGGTACAAAT GGCATCACTA
  TAGCAGCTGT AGCACTCACC CCTGGAGGAA GAGTTGGGTC CAAAGCAGAG ATATTGTGCG
  TTTGGGCCCA GCAGGAAAGG CTATCCTCAA GCTTCAACCG CTCTTGGGCT TCCTCACATA
  CACTGAGCAT CCCTTCAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50670793	NES14013372	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36516009					SNP	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50670793	NES14013372	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35024570 () rs orientation: forward

Symbol	Name	Function Class
Rr194554	regulatory region 194554	1431 bp proximal
Rr206179	regulatory region 206179	969 bp distal
Rr206180	regulatory region 206180	830 bp proximal
Rr383192	regulatory region 383192	195 bp downstream
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates