rs36516046 SNP Detail

Summary

• ID
  rs36516046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109711691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGGAGCC TTTGAAAGAC
  AGGCTATAGA TTTTTGGTAT TTAGTAAGGC TCCCCAGGGT GGCAAAGAGC TCTTTCTGAT
  TGGGCTTGCT CCCCATTGGA GCAAGTAGCA CCCTCACCCT GGCAACTCCA CCCTGCATGC
  TTTTTCTCCT CTTCTGGGCC TCCTCAGCAG CAAAATGCTC TTCCAACAGA GATAGTGGCT
  R
  CGCACCCTGG CTTGTACCTA GCACATGGTC TCCTTTAGAT TTCTTCTCTT GTTCAGGATG
  GTCTGCCCAG GCGCCCTCTC TCTGGGAGTT GGTCCTGGTT ACTGTCTCCC ACAGTCCATC
  CCCCTTCCTT GGTCCTCAAG CTTGTAGGCC CCCTCCACAG GAGTTCAAGA CTCGGAGGGG
  ATCGTGTTCC CTGCTCTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss51052555	NES14373902	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs36516046					SNP	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052555	NES14373902	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109711691 () rs orientation: forward

Symbol	Name	Function Class
Mir369	microRNA 369	1761 bp downstream
Mir410	microRNA 410	1462 bp downstream
Mir412	microRNA 412	1889 bp downstream
Mirc7	microRNA cluster 7, including Mir382 through Mir3072	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc46	microRNA cluster 46, including Mir409 through Mir410	1462 bp distal
Mirg	miRNA containing gene	within coordinates
Rr472795	regulatory region 472795	517 bp proximal
Tssr115184	transcription start site region 115184	1468 bp downstream