rs36517777 SNP Detail

Summary

• ID
  rs36517777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149201284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAGGAGG AATTCAAAGA
  ACCAAGGGCA TACTCAGGAC GCACGTCTTT TTGGTGCTGT ATTCATTTTA TTTCCTTTTC
  TTTTTCTTCT TTTTTTAAAT CTCATTTTCC CTTTTCTTTA TTTTTGCCAG TGTAAGAAGT
  GGTAGTGGCT CCGGGCTCCT CGTGCTGTGC AGGGTCCAGA TTTCATGCTT ATGCTCCTAG
  Y
  GAGGCTGCCC ATAGTAAGCA ACATCAAAGA ATACGCTGCA CTTCCCTCTC CCTCTGACTC
  TGTGACTCCT GGAAGGTAAC TCAAAACCAC AGGTCCTGCA ACTTTGTTGA ATAACAATTA
  GAAGAGGAAG AATGAAAACT AAAGGCAGAA GAAGGAGGAG GAGCAAGGGT AGGAATGGGA
  GGAGCAAGAG GTGGAGGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51540003	NES14861470	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs36517777					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51540003	NES14861470	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149201284 () rs orientation: forward

Symbol	Name	Function Class
Alox5ap	arachidonate 5-lipoxygenase activating protein	530 bp upstream
Rr124816	regulatory region 124816	516 bp proximal
Tssr49889	transcription start site region 49889	561 bp upstream
Tssr49890	transcription start site region 49890	603 bp upstream