rs36519122 SNP Detail

Summary

• ID
  rs36519122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18000454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCCAGGG CCAAGAAGTG
  AGAGTGGGTA GTTAGGGGAG TGTGTGTGTG GGGGGGTAGG GTATGGGGGA CTTTTGGGAT
  AGCATTTGAA ATGTAAATGA AGAAAATACC TAATTTAAAA AAAAAGAAAA GAAAAAAATT
  TATGAAGTTC CTTGTATTGA AACCAAATCT GAATTTCATG CCATTTATCC ATCAGAATAG
  R
  AAGAAATAAG TTTTATTCTC CTTGATAGTT TCACTCATAT TAAGGATATG ATCCAAGAAT
  GTATATATAT TTTTTATTTT AGAAGAATAT TAACTAAATT CATCAATAAG AGAGTGACTT
  ACGGGTTCCA CATCTAAGTA TGTCCTATGC TCATCTTCAT TTGGATGTAA GCCTTCAATA
  GGTTCTGAAA CATCTGGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51687608	NES14753984	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36519122					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51687608	NES14753984	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18000454 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Tssr50146	transcription start site region 50146	within coordinates
Tssr50147	transcription start site region 50147	119 bp downstream
Tssr50148	transcription start site region 50148	145 bp downstream
Tssr50149	transcription start site region 50149	162 bp downstream
Tssr50150	transcription start site region 50150	215 bp downstream
Tssr50151	transcription start site region 50151	227 bp downstream
Tssr50152	transcription start site region 50152	1531 bp downstream
Tssr50153	transcription start site region 50153	1558 bp downstream
Tssr50154	transcription start site region 50154	1615 bp downstream