rs36520361 SNP Detail

Summary

• ID
  rs36520361
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:51642266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGAAGC AGGAGTGGGT
  GGGTTGGTGA ACAGGGAAGG CAGAAGGAGA CGGGATTTTT GGAGGGGAAA TCAGGAAAGA
  GGATAACATT TGAAATTAAA GAAAATATCT AATAAAAATA ATAATAATTA ATAAGAGTTA
  TTTCATTTTA AAATAAAATT AAAAAAAGAA AAAAGAAAAC TTGAGAAGCA AGGAGAGGTG
  K
  CCTTTCTAGA GGCTAATATG AACCGAATGC TTGTACAAGA TGCCAGCTGT CATACTCAGT
  CTCAGTTAAC ACTCACAGAG ACTCAGTCGC TGACTTGAAC TTGAATTTGT CTAACATCAA
  AGCCAGGTTT TATATAACAT CACCAAGATA TGCTGCCTTT TTTTTATCCT AATAGTGTAC
  TTTTATTTAT ATTTCTGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51115398	NES13865337	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36520361					SNP	T	T	T	T	G	T	T	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51115398	NES13865337	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:51642266 () rs orientation: forward

Symbol	Name	Function Class
Gm42614	predicted gene 42614	619 bp upstream
Ppargc1a	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	within coordinates