rs36520549 SNP Detail

Summary

• ID
  rs36520549
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:126166907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGAAAG AAGAAAGAAG
  AAAGAAGAAA GAAGAAAGAA GAAAGAAGAA GCTGTCTAAT GACAGCCATG TTCTTTGGTC
  AGGTCCACAG ATATTGCCAG ACAGCACAGT CAATTATACA AAGACCCAGA TTTAGGTGAG
  GCAACTTATG CTTACTGACT TTGTGTCAGA CCCATCCTTT ATTACCCCAG GACCACATTG
  S
  CAGCAGAGGG GCCTGATGGA AGGCTAATGT CTGCTCCTTT TACTGAGTGA GCACCAACGG
  TCTCTTCTGC ACTCTTTCTG CAGCTGACTC CTGCCCCCAA GGTTTCCTGG AGGGAGGGAA
  GGATGACCAC CTGAAGACTT GATAAGAAGA TGGGAGGATT AATTACCTCA TTAATGAAGA
  TTGTGCCTAA GTACTACAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ
ss51820881	NES14712602	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ
rs36520549					SNP	G	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51820881	NES14712602	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:126166907 () rs orientation: forward

Symbol	Name	Function Class
D5Mit214	DNA segment, Chr 5, Massachusetts Institute of Technology 214	333 bp proximal