rs36520651 SNP Detail

Summary

• ID
  rs36520651
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44382544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCAAGTG TGAGAAAGCA
  CCCAGGGGCT TCCTGTCCCC TGAAGGCAGG ACATTCCAGG AAGAGGAGTG AGCATGACTT
  CCCAGGGCTG GGGTAACAGT TCTTCATGTA CCTGTGTGCT GCGTCCATGT GGCCACCATG
  TGACAGTGGA GACCTGGCCT GTCCCCTACC TAGCAGTCAG CTGATGCTGT GTTTGACTCA
  R
  TGTTAGATTC TTGGTTCCCT GCTGCCAGAG TGTAACCTCA AGTTACCCTC AGGAAGGGTA
  GGCGGGTTAC TGGGGTATGA CTCAGCCCTT GTCATTTCTA AATTTGTTTT CTCTTAATCT
  CAATTCTGTC TGTAATCCCA ACAAAAAAGT AAGTGCATTG CTGAGACTTC CAGGCCAGCT
  AAGGCTCTGC TGTGAGCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50801834	NES13525201	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36520651					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50801834	NES13525201	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44382544 () rs orientation: forward

Symbol	Name	Function Class
Rr548236	regulatory region 548236	within coordinates
Rr548237	regulatory region 548237	557 bp proximal
Scd1	stearoyl-Coenzyme A desaturase 1	345 bp downstream
Tssr159446	transcription start site region 159446	477 bp downstream
Tssr159447	transcription start site region 159447	654 bp downstream
Tssr159448	transcription start site region 159448	686 bp downstream
Tssr159449	transcription start site region 159449	738 bp downstream
Tssr159450	transcription start site region 159450	765 bp downstream
Tssr159451	transcription start site region 159451	837 bp downstream
Tssr159452	transcription start site region 159452	1127 bp downstream
Tssr159453	transcription start site region 159453	1186 bp downstream
Tssr159454	transcription start site region 159454	1218 bp downstream
Tssr159455	transcription start site region 159455	1511 bp downstream
Tssr159456	transcription start site region 159456	1633 bp downstream
Tssr159457	transcription start site region 159457	1677 bp downstream
Tssr159458	transcription start site region 159458	1707 bp downstream
Tssr159459	transcription start site region 159459	1797 bp downstream
Tssr159460	transcription start site region 159460	1834 bp downstream
Tssr159461	transcription start site region 159461	1893 bp downstream
Tssr159462	transcription start site region 159462	1921 bp downstream
Tssr159463	transcription start site region 159463	1967 bp downstream
Tssr159464	transcription start site region 159464	1990 bp downstream