rs36520757 SNP Detail

Summary

• ID
  rs36520757
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95940046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATACATC TTATATGTAT
  TTTGTCAGAT TTATACATAA GCATTTCATT GCAGAGGTGC AGATGTAAAT GATAGTGTTT
  GTAATTCCAA ATTCTATTTG TTCCTTGCTG GCATGCAAGA AAACAATTGA CTTAAATATT
  AATGTTATGC CACAATCTTG CTATAACTGC TTCTTGGTTG TAAAATATTT TCATGCCTCT
  R
  TGTAAAAGAA AAAGGGAGAA ATATGAAGTC ATGAACTAAA GAGTAAATGT TTTAATATTT
  TCTTTCTAGT TTCTGCTCTG GAGACCACTG ATTTTGTTTG TTTTGTTTTG TTTCTATTTT
  AGAGTCCTAA ACTATTGTTG TCTTAACTAT TAGGCCAAAT TCAAGCTGGA TGGGTTGATT
  TGTGCTCAGT GGTGAGTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51136773	NES14338369	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A	A	A	A	A	A
ss144995891	ENSMUSSNP3485269	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36520757					SNP	A	G	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51136773	NES14338369	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95940046 () rs orientation: forward

Symbol	Name	Function Class
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr277717	regulatory region 277717	1846 bp distal
Rr277718	regulatory region 277718	555 bp proximal
Rr285448	regulatory region 285448	1955 bp proximal