rs36520870 SNP Detail

Summary

• ID
  rs36520870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAAATT TAAACCTATT
  CTCCCTCCTG TCTGATCTCC TTTCTCCAGC CCTTGGCTTA GGAAATACAG AGGGTTGGCA
  AGCCAATGAG AATTAGCTGT GTCTGTGATG TCATAAGTTA CCAGGCAGAC AGGTTTTCTG
  GAGTTTCCTA AATTACCCTT CCTGGTTGCT GGAGTAGGCA GGATGCAAAC TTATCACGAG
  R
  ATTTCCAATG TAGTTCGTCT TACTTAGTCT GAGTCTGCGT TACTATAATA GAAAGCCACA
  GACTGGGTCA TTTATATAAA TAATAATAAA ATCTGGAGAT TTAGCCGGAC GTGGTGGCAC
  ACGCCTTTAA TCCCAGCACT CGGGAGGCAG AGGCAGGCAG ATTTCTGAGT TCGAGGCCAG
  CCTGGTCTAC AAAGTGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50416914	NES13460479	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	A	A	A		A	A	A		A
ss147250096	ENSMUSSNP7124266	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss325640672	CHEV_18_60966454	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36520870					SNP	A	G	G	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416914	NES13460479	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939872 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit78	DNA segment, Chr 18, Massachusetts Institute of Technology 78	1875 bp proximal
Rr405670	regulatory region 405670	1641 bp downstream
Rr405671	regulatory region 405671	843 bp downstream
Rr405672	regulatory region 405672	within coordinates
Tssr5344	transcription start site region 5344	871 bp upstream
Tssr151328	transcription start site region 151328	1783 bp downstream
Tssr151329	transcription start site region 151329	1712 bp downstream
Tssr151330	transcription start site region 151330	832 bp downstream
Tssr151331	transcription start site region 151331	813 bp downstream
Tssr151332	transcription start site region 151332	197 bp upstream
Tssr151333	transcription start site region 151333	735 bp upstream
Tssr151334	transcription start site region 151334	1099 bp upstream
Tssr151335	transcription start site region 151335	1108 bp upstream
Tssr151336	transcription start site region 151336	1142 bp upstream
Tssr151337	transcription start site region 151337	1196 bp upstream
Tssr151338	transcription start site region 151338	1252 bp upstream
Tssr151339	transcription start site region 151339	1431 bp upstream
Tssr153493	transcription start site region 153493	1255 bp downstream
Tssr153494	transcription start site region 153494	1277 bp downstream
Tssr153495	transcription start site region 153495	1493 bp downstream