rs36522816 SNP Detail

Summary

• ID
  rs36522816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35748441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAGAAGC TCATTTTTCA
  AAGGAGATGG GAATGGGTCT TATCGAAGCG TGGTTAACAG AAAGAGTGCA GGAGCAACCA
  GTTGAACACT AGTGTTCTTA TTCTGTCTGC CATACTCTGC TCCCAGCACT ATGTATGAGT
  GGAGGAGGAT GTTCAAGATT AAACTCTGTG AGCACTGCTT TGTGCTTGTC CTTGGATGAT
  Y
  AGCATTATGA AGATCAGCTG CCTTTGCTGT GTGTGCAGGA ATGCAGGGTC AATGTTCCTT
  CTTACAGATA ACACTTGCCG CACACAAAAA TGTAACTAAG TGAGACTCCT GTGTTCTATT
  AGATAATAAC CATAGGGATA TTCTAGTCTC TGATCACTCA CATAGTCCTT GACATTCCTA
  AAGTTGTGAG AATGTTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50672077	NES14008984	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	C		T
ss322901345	CHEV_9_35644730	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36522816					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50672077	NES14008984	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35748441 () rs orientation: forward

Symbol	Name	Function Class
Gm36974	predicted gene, 36974	688 bp downstream
Pate5	prostate and testis expressed 5	1184 bp downstream