rs36523380 SNP Detail

Summary

• ID
  rs36523380
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:28905024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATCAAA GCAGCCATCG
  AAACTTAATG TCAGTTTAAT GATTTCTTTC TGGCTTCCTT GTCATTGACC AGTATCTTTA
  TATCTTAAGA TTAACTGTTG AAGAATTTAA AATTTATGAG TTTATGTGCA AAATTAATTT
  AAATTCAATA CTAAGAATAC ATGCAGAAAA TGCTAAAAAA TGAACATTAG GCAAAAAAAA
  M
  CATGCAAATC ATAGCTCTAG TTAATTAGGA TCATATTTGT TATTTTTAAT TGCTTGTGGT
  CAAAGGTTAA CAATTCACTA AAAATTTTAT GTCTTAAGAG ATGTTCCCAG GAACTCTTCA
  AAGGCTTTTA GAAACAATTC CCTTGCAAAT TTTGTACTCA TGACACTTTC CCATATAGTC
  AACGATAATG ATCCTAGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50836143	NES14188985	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36523380					SNP	A	A	A	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50836143	NES14188985	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:28905024 () rs orientation: forward

Symbol	Name	Function Class
Gm9824	predicted pseudogene 9824	1100 bp upstream
Gm68174	predicted gene, 68174	1071 bp upstream
Rr429457	regulatory region 429457	981 bp proximal
Rr429458	regulatory region 429458	1082 bp proximal
Tssr92858	transcription start site region 92858	1041 bp upstream
Tssr92859	transcription start site region 92859	1709 bp upstream