rs36523535 SNP Detail

Summary

• ID
  rs36523535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18002831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTGTCA TTTATCATGT
  CTACCATGCA CAATTCTTTG TGTCAAAGCT CATTCAATAT TCTCTCTGAT CCACAGCTAC
  CCTTATGTGA CAAAGCACTG TTCTCAGTTA TTTTATACAT AGGGTAATGA TTCTGGGGTG
  TGTAATCAAT AAATCTGTCT ATAGTCTCCT TTTCAGAGAT AAGACTGTAG GTCAAGAGTA
  R
  TTGTATGGAC TTCCGTACTC ATGGTTATAC TCAGCCCCAC CAGTTCAAAA ACTTTGCTGT
  GTGAATCATT AACATAGTTC TGAAATAAAT GTGTCATCTT CTTTAGACAT CTTCAGAAAG
  AAAAGATCCC CTTTACACTT GATTTCTATA TCTTGAAACT TTATCAGCAA ACAGGATAAA
  TATTACTCCA AGAAAATGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51687548	NES14753965	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36523535					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51687548	NES14753965	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18002831 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Tssr50152	transcription start site region 50152	833 bp upstream
Tssr50153	transcription start site region 50153	765 bp upstream
Tssr50154	transcription start site region 50154	638 bp upstream