rs36523600 SNP Detail

Summary

• ID
  rs36523600
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11485698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAGACCC CTCTTCCACT
  TTCCGAGCTC GAAACAACCC AATTTAAGTT AAAAACACAG AACGACCTTT TCTCCTTTAA
  AGCAACATTA CCAAATGCAA CATGCCAAGG GGTGTGCAGT TCCCAGCCCT GCATTCCGGA
  AGGCAAATGC GGAATGCGGA GTCAGGTAGC TAGTTAGGTC CTCATCCAGC CACTCTTGAC
  W
  CTGTTCAAAA TCAAAGATGC TGTAAAACAG CTTTCCTTTT TCTTAACAAT TCATCATTGC
  GACGAATAGA GAAAAGAAAA AGAAAACAGC ATTTTCCAAG TACTAACAAT ATACTTGTGC
  GCCTAACTCC TTGGGTTTTA AACCCTAGCA TCCTGCATAG CAACCAATGG TGATGCCCAC
  ACCAGCCTCA TCCACTCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50960697	NES14422070	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36523600					SNP	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50960697	NES14422070	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11485698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4418	CpG island 4418	792 bp proximal
Rr462902	regulatory region 462902	68 bp distal
Rr462903	regulatory region 462903	within coordinates
Rr462904	regulatory region 462904	906 bp proximal
Tssr3791	transcription start site region 3791	778 bp downstream
Tssr3792	transcription start site region 3792	821 bp downstream
Tssr3793	transcription start site region 3793	1014 bp downstream
Tssr115745	transcription start site region 115745	44 bp upstream
Tssr115746	transcription start site region 115746	801 bp downstream
Tssr115747	transcription start site region 115747	853 bp downstream
Tssr115748	transcription start site region 115748	910 bp downstream
Vsnl1	visinin-like 1	within coordinates