rs36525252 SNP Detail

Summary

• ID
  rs36525252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:46606249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCTTCC TTCCAACCCC
  AGGCTTCCAG GGACCAAGCT CAAGGGTGTC CTGCTTGATG GCAGCTGTCT CACCAACCTG
  TCAGCCCTTT TGTCTGAATG CCTCCTTCAC TAGAGACAAC TTGACTTTCC CTTGTCCGCC
  TCCAGCTGGT ATCTTAGATT TTACAGGGGA AAGAAATACA AGCAAGAGTT TGCTACAAGC
  Y
  GGTGAACTGC CTCTCCCTGT CTTTCTTTGT GGCCTTGTGG GCGCCATCAT GTAACTTCTC
  TCAACTTATT TTCTTACCTA CAAAGAAAAA TCCTACCCAC TCCCGAGGCT CACCATGAGG
  ATTAATTGAG AGGAGGCAGT TTATCAACAT CATGGAAATC GAATAAAACT ACTTGGAAAT
  CAGTTCAGAA AGGTACAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51891874	NES14911538	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	C	T	C	C	T
ss149183193	ENSMUSSNP2844127	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36525252					SNP	T	C	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891874	NES14911538	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46606249 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19131	CpG island 19131			1573 bp proximal
Gm39012	predicted gene, 39012			1382 bp upstream
Rr646810	regulatory region 646810			1256 bp proximal
Rr646811	regulatory region 646811			1405 bp proximal
Tssr72574	transcription start site region 72574			1943 bp downstream
Tssr72575	transcription start site region 72575			1974 bp downstream
Uevld	UEV and lactate/malate dehyrogenase domains			Intron
				Noncoding-Transcript-Variant