rs36525931 SNP Detail

Summary

• ID
  rs36525931
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83080008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGAGAA AAGAAGGGAA
  GGAAGGAGAA AAGAAGGGAA GGAGGGAGGG AAGGAAGAAG TGAGGGAAAG AGGAAGGGAG
  AGGAAAGAAG CAAAAAGGAG AGAGGAAGAA AGGATGGAAG GTAGGAAGAG AGGGAAGGAA
  GGTAAAAGAA AGGAAAGGAG GGAGGGAGGA GGAGAGGAAC TATGTTGTAA GGGATATAGA
  M
  ACTTGGTCAT ACATCATTCA ATTAGTATAT AACATAACCA CTATGTTGCT GAACTGTAGG
  ACATCAGGTG TGCAGTGGCT CGTCCAGATA TCACCAGTAC CAGCATGTTA AGAGAGCAAA
  GCTGTGGCCA TTCAAGGTCA AGAGAGGGTC TGTGAGATAG ATCTGGGAGT GAGGGTGGAG
  CATGACTTTG TGTGTGAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51971197	NES14983394	PERLEGEN	MM_PANEL2	f	SNP	A			A	C	A	C	A		C	A	C		C
ss145303246	ENSMUSSNP4822693	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss322735742	CHEV_8_84877278	CHEVERUD	SCREENING_POP	f	SNP									A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36525931					SNP	A	A	A	A	C	A	C	A	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971197	NES14983394	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83080008 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Rr400995	regulatory region 400995	1827 bp downstream
Rr666114	regulatory region 666114	1727 bp distal
Rr666115	regulatory region 666115	1934 bp distal
Tssr81943	transcription start site region 81943	29 bp downstream
Tssr81944	transcription start site region 81944	73 bp downstream
Tssr81945	transcription start site region 81945	116 bp downstream
Tssr81946	transcription start site region 81946	171 bp downstream
Tssr81947	transcription start site region 81947	954 bp downstream