rs36527608 SNP Detail

Summary

• ID
  rs36527608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57174182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATATCTA ATAAGTTCCA
  GGAGACCCTG GACTACAGAG CGAGCTCCTG TCTTACAGGA GAAAAACCCA CCTGGCCACA
  CTTTGCTGAA ATCTGCACAC ACACACACAC ACACACACAC ACACACACAC ACACACCCCT
  CCAGCCTCTA AGATACTAAC AAGCTTCAGG CTAATACAGG GCAACTGAGA CCCAGAGACC
  Y
  AGTTCTGTGC CAGGGCATCA GGCAGGAGGG CTTACAACCT ACATCTTCTG AGGCTAATGG
  TTTACACAAG TTTCCTTCCC ATTCTGATCC CCCACCCCTC TCTCCATCTT TCTGCCTAAA
  CCCAGGATGA CAAAAATAAA ATAAAATAAA ATAAAATAAA AATTGGCTGT GAGTTCCATC
  TGCCTCCTGT GCCCTGCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52020743	NES15041793	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36527608					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52020743	NES15041793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57174182 () rs orientation: forward

Symbol	Name	Function Class
Gm68485	predicted gene, 68485	within coordinates
Gm68491	predicted gene, 68491	1236 bp downstream
Rr679625	regulatory region 679625	1444 bp distal
Rr679626	regulatory region 679626	386 bp proximal
Rr679627	regulatory region 679627	1658 bp proximal
Tssr89773	transcription start site region 89773	1109 bp upstream
Tssr89774	transcription start site region 89774	1081 bp upstream