rs36528004 SNP Detail

Summary

• ID
  rs36528004
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:20987821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGCCAT GAGTTCAAAA
  TTCAAGAACA ACTTGTCTTA CTTAGTAGCT ACAGGCTATC CTAGGATATG ATGGGGACCT
  TGCATTACAC ACACACACAC ACACACACAC ACACACACAC ACACACACTG GAGGATGGAA
  TAGATAGTCA CAGAGAGAGT CAGATACAGA GAGATAGACA CAGAGACAGA AATCTATGGC
  M
  TCTGGTGCGC TGTTCTGTTT ACTCTCTTTG CTGACTTCAG AGAAGGATGA GTCCCACAGA
  TGTAAACCAA GGTTGGGTCG TGGAAATGCT TTGACTGCCA AGGTCAGGAA TGTGAGCTTT
  CATTGGCAGT TGGAAAGTTG GAAGTTACCA GAAGCTTTGG AGCCGCCAGC CCCCGCCCCC
  CACTTTTTTT TTTTTTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51232300	NES14289227	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36528004					SNP	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51232300	NES14289227	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20987821 () rs orientation: forward

Symbol	Name	Function Class
Paqr8	progestin and adipoQ receptor family member VIII	within coordinates
Tssr6058	transcription start site region 6058	243 bp upstream
Tssr6059	transcription start site region 6059	259 bp upstream