rs36528158 SNP Detail

Summary

• ID
  rs36528158
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16676832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGTATGTG ATTTAGGTTT
  TTCATCTTGT CCTGTGGATC CACTCTAGTG CCTCCATGTT CACACACACA TACACACACA
  CACACACACA CACACACACA CACACACACA CACAGTGAAA GAAACAAAAA AAATTTTTTT
  TGGAACCCAA GTCGATCTGG AGATAATGTA AGCTTTGGGG TTAGATAAGA TATTCAGAAA
  R
  TTCACTTTGG CTTTGTATTA ATTAATGATG GTTGCTGTAA AATGCCACAT CACACAGGCA
  TTTTGCATTT GAGGCTAGCA TGGCGTTTCT GTCTGAGGGA CATGAGCAGG GGAAATGGAG
  AACAGGTAAG CAGTTTGCAC AGTGCCCGGT TGCCATGGGA ACTGTGCCAT CAACCTTTTT
  TTTTTTTTTT TCTTTACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51882300	NES14894124	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36528158					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882300	NES14894124	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16676832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	1547 bp proximal
Pnma8b	PNMA family member 8B	1775 bp upstream
Rr368243	regulatory region 368243	1549 bp upstream
Rr642821	regulatory region 642821	20 bp proximal
Rr642822	regulatory region 642822	1285 bp proximal
Rr642823	regulatory region 642823	1698 bp proximal
Tssr64660	transcription start site region 64660	1738 bp upstream