rs36529099 SNP Detail

Summary

• ID
  rs36529099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164944930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGAGTTTA CTATATACAG AAAAAAGAAA AAAAAAAAGA
  AACTTTAAAC CAAACTCAAA AAATACACAG TGGCTGCTTT AGGCCAAAGA ATTCACCTTA
  Y
  AGTAAATGGA CAAGGTGAGC CATTTTGCAG AAGTTAGAAT TATAATAGAA ATGCTTTGAA
  AGGTGGGGAC TGTCCTACAG TTTAAAGGTT ATATCTTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51403060	NES14459622	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36529099					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51403060	NES14459622	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164944930 () rs orientation: forward

Symbol	Name	Function Class
Gm70481	predicted gene, 70481	1704 bp upstream
Gm70981	predicted gene, 70981	1828 bp upstream
Rr422316	regulatory region 422316	1961 bp distal
Rr422318	regulatory region 422318	1637 bp distal
Rr422319	regulatory region 422319	1698 bp proximal
Rr422320	regulatory region 422320	1911 bp proximal